Define a brain template using vertices and faces¶
This example illustrate how to define a custom brain template using your own vertices and faces.
import numpy as np from visbrain import Brain from visbrain.objects import BrainObj from visbrain.io import download_file """Download and the load the Custom.npz archive. This file contains vertices and faces of a brain template that is not integrated by default in Visbrain. """ mat = np.load(download_file('Custom.npz')) """Get vertices and faces from the archive. In this examples, normals are also present in the archive. If you don't have the normals, the BrainObj will compute it automatically. """ vert, faces, norms = mat['vertices'], mat['faces'], mat['normals'] """Define the brain object """ b_obj = BrainObj('Custom', vertices=vert, faces=faces, normals=norms) """Then you have two strategies : * If you are going to use this template a lot and don't want to redefine it every times, use `b_obj.save()`. Once the object saved, it can be reloaded using its name only `BrainObj('Custom')` * If you only need it once, the template is temporaly saved and remove once the GUI is closed. """ # b_obj.save() b_obj = BrainObj('Custom') """Define the GUI and pass the brain template """ vb = Brain(brain_obj=b_obj) vb.show() # If you want to remove the template : # b_obj.remove()
Total running time of the script: ( 0 minutes 0.000 seconds)